rs36439430 SNP Detail

Summary

• ID
  rs36439430
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10581660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTCACACT TCTGCTCTGA GATGCCGCCG GGTGGACGGT
  CCTGACTGCT ACCAGGTCTG AAGTAGAGAC AGCAGCACCT GCAGGAGTGG AAAGGACTTG
  R
  GTTGCTGAAG GTATGGGCAG CCGATTGGCA ATGTCATGCC TCCCGTGCCT GTGCCTTAAG
  AATTAGGGAG CTGCCTCAGA CTTTGATCCA AGTCCAAACT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50601266	NES13643038	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36439430					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50601266	NES13643038	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10581660 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10614	CpG island 10614	1246 bp distal
Cpgi10615	CpG island 10615	936 bp proximal
Ddb1	damage specific DNA binding protein 1	1301 bp upstream
Rr362968	regulatory region 362968	within coordinates
Rr405857	regulatory region 405857	1059 bp upstream
Tkfc	triokinase, FMN cyclase	within coordinates
Tssr155068	transcription start site region 155068	1243 bp upstream
Tssr155069	transcription start site region 155069	1260 bp upstream
Tssr155070	transcription start site region 155070	1331 bp upstream
Tssr155071	transcription start site region 155071	1388 bp upstream
Tssr155072	transcription start site region 155072	1623 bp upstream
Tssr155073	transcription start site region 155073	1977 bp upstream
Tssr158200	transcription start site region 158200	8 bp downstream
Tssr158201	transcription start site region 158201	20 bp downstream
Tssr158202	transcription start site region 158202	57 bp downstream
Tssr158203	transcription start site region 158203	98 bp downstream
Tssr158204	transcription start site region 158204	1069 bp downstream
Tssr158205	transcription start site region 158205	1114 bp downstream
Tssr158206	transcription start site region 158206	1171 bp downstream
Tssr158207	transcription start site region 158207	1572 bp downstream