rs36440000 SNP Detail

Summary

• ID
  rs36440000
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:30513890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAATCAAG CTACTCCCAC
  CATTTAGCAT TACAGCCAGA GCCCACCGCT GCCAGTGGTC AGCAAGATTG AGTGTTCCAT
  CAGCTCTGGA TGGAGGAAAA GAGAAGGTTT GTTATTTCAG TGCCAGGTAG ATTCCATTTT
  AATAATAAAA AAAAGTCTCT TTCCCCTACT ACCTCCTGGC CAAGAAGTTT TATCTGAAGT
  S
  TAAATGCTTC TTAAGGTAAA TACTCTGCCA GAAGGAGAAT TAGAATAGTG ATAGCTTATA
  TGTGTTTTAG ACTCCCTAGC TAAGTATATT GAATTTGGCC TGGCAAGAAA AGCTACTTTA
  GAAAATTAAC AAAAAATTGA AATTGATCAC TGGAATTTCA TCCTGAAGAC TGTTTAAGAG
  GTCTAGCTCT TCAGCTGGTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51572127	NES14860659	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36440000					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51572127	NES14860659	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:30513890 () rs orientation: forward

Symbol	Name	Function Class
Rr148899	regulatory region 148899	within coordinates
Ssmem1	serine-rich single-pass membrane protein 1	within coordinates
Tssr55343	transcription start site region 55343	1603 bp downstream
Tssr55344	transcription start site region 55344	1572 bp downstream
Tssr55345	transcription start site region 55345	1558 bp downstream
Tssr55346	transcription start site region 55346	1546 bp downstream