rs36440008 SNP Detail

Summary

• ID
  rs36440008
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:96356918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGGTAAA TTGTATTATA
  TAGAATAATA GGTCTCAGAA TTGTTTCAAA TAAATAAAAA AATTACTAAT TCTGTTTATT
  ACATAAAACC AGGAAGAAGT GGCCATAATT CAGTCCTGGA AGTATGAAAG GAGACTGCCA
  ACAATGAGCA GAGTCTGAAT TTAAATCTTA AGGGGAAAAA ATACTGTTAA TGTGTTGCAT
  R
  ATAATTCAAA CAAAAGCCAG AGAGGAAAAA TGTCACAGAG GTGAGAAATG TGTCTTCTGC
  CCTCCCTTCA TCCCTCCCTC CCTCCCTCTC TTTGTGTGTG TGTGTTATGT GTACACTCGC
  ATGTGTGTTA GGAAGGTTGT TGGTTGAGGA GGTAGGCAGA GGCCCGTAAG TGAGCCTTTG
  GAAATGGCCA ATTACTGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51771863	NES14721818	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36440008					SNP	A	A	A	A	A	G	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51771863	NES14721818	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:96356918 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16074	CpG island 16074	904 bp proximal
Gm72185	predicted gene, 72185	within coordinates
Mrpl1	mitochondrial ribosomal protein L1	439 bp upstream
Rr367885	regulatory region 367885	892 bp upstream
Rr614891	regulatory region 614891	1889 bp distal
Rr614892	regulatory region 614892	148 bp distal
Rr614893	regulatory region 614893	within coordinates
Rr614894	regulatory region 614894	445 bp proximal
Rr614895	regulatory region 614895	983 bp proximal
Rr614896	regulatory region 614896	1096 bp proximal
Tssr47395	transcription start site region 47395	404 bp upstream
Tssr47396	transcription start site region 47396	685 bp upstream
Tssr47397	transcription start site region 47397	1069 bp upstream
Tssr51962	transcription start site region 51962	946 bp downstream