rs36440085 SNP Detail

Summary

• ID
  rs36440085
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:35515431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCGTGTGTT GTTCCACTAC
  TGGTTGATGT ATTTTTCTAT AACTCTACAT TGAAGAGACG GTAGTTCAGG TTTCTATTTG
  TTACTAGCTA AGGTAGTCAG AAGGTAGCTT GCCTTAAACA TCCATTACAA TCAACTAAGC
  AGATCAAATA CATGTGAAAA GTCTAAATTA TAAGGCATCA AGTGGAGAAA AAACTATCAT
  Y
  CTTGTACAAT CCTGTAGTTA AAAACAAACA AACTAACCAA CCAATCAACC TGCTTCTGCC
  TGTTTCCTAA AACAAGTCCT GTGAGGCAGG ATGCCACCGC TCACACCTTT TAAGATTTAA
  AATCTTGACC GCAGGCTCAC ACTTTTTGAA GAGGACCAAG ATGTTCACAG TTGTCACAAA
  ATTCTACTTT CGGAAAATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51601182	NES14847544	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36440085					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51601182	NES14847544	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:35515431 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17298	CpG island 17298	630 bp proximal
Gm68014	predicted gene, 68014	1339 bp upstream
Mtpn	myotrophin	within coordinates
Rr146138	regulatory region 146138	within coordinates
Rr399612	regulatory region 399612	1261 bp upstream
Tssr60312	transcription start site region 60312	213 bp upstream
Tssr60313	transcription start site region 60313	1211 bp downstream
Tssr60314	transcription start site region 60314	1251 bp downstream
Tssr60315	transcription start site region 60315	1269 bp downstream