rs36441699 SNP Detail

Summary

• ID
  rs36441699
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:32305180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAATCTAA TACATCTGTG
  CTCACTATAA CAGATAACCC CAGCTGCTGC TGCAGGCTGC ACAAGACTGG GGGGAGGGGC
  CTGGCTAGGG AGGTGTGTAG ATGTGCATGT TTAGTATATA AATGGCTACG AATGTGTGCA
  TGCATGCGTA CACCCACGTG CCTGTTCATT TGTGGTTTTC TGAAGCTGCT CTTTAAACCC
  S
  TGTGGCATCC CCGCTGAATC TTGCATCTCC TCCTGCAGCC AGTAGGTGGC AGAGCTGCAA
  CAGGCCGCTG ATTCCAGTCC GATGGCACCA GGGTCAGGAC GAGGGAGGGA AGACCTGTCC
  AGTAAGCTCC CCCTGCCCCA AGGTGTCCTA TGGAGCAGAG GTCCTGAGCA AGACGATTTA
  AAGGAGAGCT AGCCAAAACG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51582930	NES14855668	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36441699					SNP	C	C	C	C	C	C	G	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51582930	NES14855668	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:32305180 () rs orientation: forward

Symbol	Name	Function Class
Plxna4	plexin A4	Intron
Rr628093	regulatory region 628093	711 bp distal
Rr628094	regulatory region 628094	within coordinates
Rr628095	regulatory region 628095	35 bp proximal