rs36442304 SNP Detail

Summary

• ID
  rs36442304
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:66210305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCAGTGAC ATCTGACCCT
  TTTTATAACG TGCACCTTGT ACCAGTGAAA CCTAAGGCAC CAGCTGGTTA CTTATTAAAC
  TTGGGTGCCA AAGGCTGACT TGTACAAATG ACAGTATTAA CTGCCCCGCC TGGTCTGTGT
  GCAGGAGTGG ATCCAGCAAT CCTCATAGCT GTGAATTTCT GTCATATCGG CAGAATTCAG
  M
  AACAAATTGC AGCAATTTGA GTCTGACCTC TGATCCGCAA GGTTCATGTG AACCTTTGAA
  CCTCAGCTTG GAGTTGAGAA ACATCGAGAT GGTGGTTAGT AATTATTCTC CCAGGCCAGG
  TAAATAGTTA ACACCGTGGC CGTTGCTCCG CCCGAAAGCA CAATCCGCAG ATCGAGAGAC
  CAGTCATTGA AGGTGCCATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51731027	NES14743151	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36442304					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51731027	NES14743151	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:66210305 () rs orientation: forward

Symbol	Name	Function Class
Rbm47	RNA binding motif protein 47	within coordinates
Rr125273	regulatory region 125273	504 bp distal
Rr125274	regulatory region 125274	95 bp proximal
Tssr46522	transcription start site region 46522	163 bp upstream
Tssr46523	transcription start site region 46523	176 bp upstream
Tssr51169	transcription start site region 51169	187 bp upstream
Tssr51170	transcription start site region 51170	1537 bp downstream