rs36442466 SNP Detail

Summary

• ID
  rs36442466
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60661172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTGGATT TTTGCACTAG
  CAATTTGTGT GATAGCAAGA ATCCTATAAT TATCAAATAA AATCTCATTA CTTGAAATAC
  TTTCTTACAA AGTTTTTTTT CTTTTTAAGA GTGGATCTAA TATGTAAGAC TGTGTTTTGA
  GTTAAATACA GTAAATAAGA TACTTGGGTT GTTCAATTTG TTATTTTTCT AAAAACCTCT
  R
  ATTTGGGCTC TAGAGAGCTG GCTCAGCAGG CACAGGCTCT CTTGCTGCCA AGCCTGTCAG
  TCAGTCTGAG TTAGGACCAA GGACCTCCAT GATGGCAGCA GAGAACCAAG CCCTGTGCAT
  TATCCTCAGC ATCCACACAT GAGCTGTGGC CCCTGCAGGC TACCTCCCCC TTCACGTAGG
  CACAGCATAC ATGTAAGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50418776	NES13462989	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36442466					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50418776	NES13462989	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60661172 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10090	CpG island 10090	1379 bp distal
Dctn4	dynactin 4	within coordinates
Gm58902	predicted gene, 58902	1673 bp upstream
Gm58903	predicted gene, 58903	322 bp downstream
Rr351670	regulatory region 351670	619 bp proximal
Rr352957	regulatory region 352957	371 bp distal
Tssr151313	transcription start site region 151313	1866 bp downstream
Tssr153450	transcription start site region 153450	1997 bp upstream