rs36442678 SNP Detail

Summary

• ID
  rs36442678
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:91731975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CCCAACCGCT GGGCTGTGGA GCGTGAAGGG GCCACACCCT TTCACTCCCG
  W
  GTAACCCTCA TGAACGGCGC ACTCATGAAA CCCAGTCACG TCATTGTGGA           
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51366841	NES13739712	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36442678					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51366841	NES13739712	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:91731975 () rs orientation: forward

Symbol	Name	Function Class
Rr379752	regulatory region 379752	1420 bp upstream
Rr634559	regulatory region 634559	1686 bp distal
Slc6a6	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	within coordinates
Tssr57746	transcription start site region 57746	14 bp downstream
Tssr57747	transcription start site region 57747	164 bp upstream
Tssr57748	transcription start site region 57748	1003 bp upstream
Tssr57749	transcription start site region 57749	1149 bp upstream
Tssr57750	transcription start site region 57750	1499 bp upstream
Tssr57751	transcription start site region 57751	1600 bp upstream
Tssr57752	transcription start site region 57752	1989 bp upstream
Tssr62094	transcription start site region 62094	237 bp downstream