rs36443925 SNP Detail

Summary

• ID
  rs36443925
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69619456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAGGTGG AAGGCTGAAG
  GTTGCTACAT GGGGTCGCTG GTATAATACA CACAAGTCTG GAAATGACTG CCAAGGCAGT
  GATGAGCCAG CACACAGACT GAAGCCCGTC CTGCAAAAGC CCGATTATCA GATGATTAAA
  AAGCTGAACT CAAGGTAATT CTTACTACAG AGCAGCTGTG AGGAGTGTGA CAGACTGCAA
  Y
  TGGTGGCTTG TCGGAGCCTG AGAAAGTCTG TGGGCTCTCC GTATAGTCTG GCTTGACCTC
  AAGATGTCTA ATCCTGTTCT GTAAGGAGGA AACGTCGGCG TTTTCAACCT TACGAATATT
  AAAAACATGA ACCTATCATA CATTAAAGTA ACGTATCAGT AAAGATGTCA AAAATCAAGA
  GCTGTTTAAT GTTTATAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51017789	NES14400737	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36443925					SNP	T	T	T	T	C	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51017789	NES14400737	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69619456 () rs orientation: forward

Symbol	Name	Function Class
Rr257072	regulatory region 257072	1056 bp distal
Rr257073	regulatory region 257073	345 bp proximal
Rr257074	regulatory region 257074	1945 bp proximal
Rr403327	regulatory region 403327	1862 bp upstream