rs36445387 SNP Detail

Summary

• ID
  rs36445387
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:31466275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTATTTC CAGACTTCTT
  TGAAAGGCCA GTTTCAACTG GGAGACTTTC CAATGGACAG TGTCCTAGTT CTATTGTGAA
  GGGATATGTT GCAACACACA GTAGCCTTCT GATGTACTAC TTCCTGGCCC CACTCTTGGT
  CTAAGAATCA ATGGCTGGAA GGTCCAAGAC TACTCTGATT TTCTTGTGTA TACTGCCTTT
  S
  GGTGGATCTT AACTGCCACG GACCTGCAAG ACCTTACCTT TTTAGCAATT TGCTAAGAAT
  AAAAAGTCTG CGCTATCCTT GAGTACATTT TCTAGATAAC TAAAATTTAA AGAAGAATGT
  ACTGCAATAT TTAATAGGGC TATATGGACA AGGATTTTTC CCCCTTTCTG AAATGAGCTA
  TTGATTAGTG TTCAAAAGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51630487	NES14594912	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	C	G	C	G	G	C	G	G	G	G	G
ss147445766	ENSMUSSNP4429206	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36445387					SNP	C	C	G	G	G	C	G	C	G	G	C	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51630487	NES14594912	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:31466275 () rs orientation: forward

Symbol	Name	Function Class
Marchf6	membrane associated ring-CH-type finger 6	within coordinates
Tssr133930	transcription start site region 133930	1778 bp downstream
Tssr133931	transcription start site region 133931	1809 bp downstream
Tssr133932	transcription start site region 133932	1842 bp downstream