rs36445643 SNP Detail

Summary

• ID
  rs36445643
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90175162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCACCCCT TGGAGCTCAG
  TGCTGGGCTC CTGGGTGGAA CTCAACCAGT CATCTGCTAC CGCAGGGGGC GTGACAAGCC
  CCCCCTCGTT GAGCTGGGGT ACGTACCCCT ATCCACGCTG GCACTAGAGG AAGCTGGGAG
  GGACCTTTGA ATGAGCTAGA AGAGGTAGGG ATATGGGTCA AGAGGAGGAA TGTGGGGACC
  R
  CAGCGGAATA GGCTAGAGGT CAAGAGAATG GGCTCACTGC CTTTGCTGCG GTCAACGTTT
  CCTCATCTGC AAAATGAGGA TAGTGGCTCC TCTCTGGCTG GCTCAGAATA TTAAATGAAG
  TAACCCGTGT GAGGAACTTT GAACTTTGCA GAGCCTGTTG GTTCTGAGTG CTTACTCTTG
  AGAGCTATGG AAGGTATGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50992054	NES13923871	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36445643					SNP	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50992054	NES13923871	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90175162 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13456	CpG island 13456	1660 bp distal
Dennd4b	DENN domain containing 4B	within coordinates
Gm65083	predicted gene, 65083	1459 bp upstream
Rr580322	regulatory region 580322	1470 bp distal
Rr580324	regulatory region 580324	1331 bp distal
Rr580325	regulatory region 580325	983 bp distal
Tssr30185	transcription start site region 30185	1917 bp downstream
Tssr30186	transcription start site region 30186	1888 bp downstream
Tssr30187	transcription start site region 30187	1354 bp downstream
Tssr30188	transcription start site region 30188	1289 bp downstream
Tssr34203	transcription start site region 34203	1458 bp upstream