rs36446472 SNP Detail

Summary

• ID
  rs36446472
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:42111961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCTGTGG CACAAAACAG
  ATGGCTGGGT GGTGACATTA ACTGTCAAGT TAGTGAGATG CAGAGATGGT GAGACACTGC
  ATTTGAGTGC ATAATACTTT TATTCCAGAG GAACGCCATG CAGCCCAGTT ACACCTTTAG
  GTCAGAAAGG CTGATGCGTG ACCAGCCTCT ATTGCCTCCC TTGGTAAGAA GGACCCACAA
  R
  TGCAGAGTCC AACAGATGCT GGCTCTGAGC TGAACTCAGG GCATTCCAAT TACCACTTTC
  TTCTTCACCT ACACAGGGCC TGCTCAGATG TCCTTTTTAC AACTCCATAA GCCCTTTGGC
  CAAAGTCCCT GCAGTGTTTG GGGAGGACCT CCCCACCCTT CACCAGTCAG TGTCTGATCT
  GGTGGAGGTA ACCTGTGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss50819833	NES13535562	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs36446472					SNP	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50819833	NES13535562	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:42111961 () rs orientation: forward

Symbol	Name	Function Class
Avpi1	arginine vasopressin-induced 1	mRNA-UTR
Pi4k2a	phosphatidylinositol 4-kinase type 2 alpha	1435 bp downstream
Rr547822	regulatory region 547822	975 bp distal