rs36446782 SNP Detail

Summary

• ID
  rs36446782
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:41032694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACAGTCCC CTCCTGGCCA
  CCCGTCGGGA TTGAGAGGAA ACTGAACAGA ATTGACCATG CCACCCTAGA GAATGGGATT
  CCCTAAGGAT GATTAGATTG TCCCATCCTA CAGGTCAGGA TGAGTGTGCT CAGCCAGCTG
  GGGCAGCTCT GAACATGCAG GATGGTAGCA CTGAATCTGT GTGGCCTCGT GGTGGGCTAT
  W
  TCAGGAATGC ATAGAAATGA ATCATCTCCA AGCATCCTTA AAACCATGAA AGATGATCCA
  AAGGAGGAAT GGAATTCAAA ACAACCTCAT ATCAGAGAAT TTAAAATGGG TGAAATGTTA
  CCGAATCACA GTAGCTGTCA TAGTGTGGCA ACACTCCTAC CTTAAGGACC CAGGAGTGTA
  GTAATGTGGT TTAAGCTGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51242060	NES14285553	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	T	T	A		T	T	A	T
ss148988455	ENSMUSSNP1687796	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36446782					SNP	T	T	T	T	T	T	T	T	T	T	T	A	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51242060	NES14285553	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:41032694 () rs orientation: forward

Symbol	Name	Function Class
Gm70541	predicted gene, 70541	1161 bp downstream