rs36446933 SNP Detail

Summary

• ID
  rs36446933
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:22010067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAGAATT GAACACACTA
  AATATGTTAC TGAAGATTAT TCTGGTTGTT GCTGGTATTT CATCCTTTTC TTCAGAGCTA
  TAAAGTGCAA GGCATTCACA ATTTCCCACA GAGTGAGCAG GTCTCAGTGT CTGGGTTGTT
  GCTTGAGCTA AGGAAGAAAG AGGAAATGGT GGGTGTGGGG AGCGAGGAAG CAGGGCCTAG
  W
  TTTTCTGAGC TTTGCACAGA GTCCTCCTGC CGTTGGCCTT CCCCACAGTG AGCCAGAAAT
  AAGAGAATAC ATTTGTATAA ATTATGAGCA TTGAGAATGT AGCTCAGCAT AGAGCACTTT
  CCTAGCATGC ATCCTTAGCA TGCTGTTTGT TTTTAAAAGC TTGATAACTA TGAACTAACA
  TTTAATTGTG AGTGACATGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51434210	NES14436550	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36446933					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51434210	NES14436550	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:22010067 () rs orientation: forward

Symbol	Name	Function Class
Gm31813	predicted gene, 31813	within coordinates
Rr397621	regulatory region 397621	1998 bp downstream
Rr574173	regulatory region 574173	within coordinates
Rr574174	regulatory region 574174	1288 bp proximal
Tssr28575	transcription start site region 28575	815 bp downstream