rs36447220 SNP Detail

Summary

• ID
  rs36447220
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:52522307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTCTCCC GCTATGCTCT
  AACGGCAGGG TCACACTAGG CCACATCAAA GGGGAGGGGT CTGTAGGTTT TACGTTCTCA
  ATGTCCCCTG AGACCTAACA TCTTTGTTCT TCTCAAGCCA TCTCTGGGTA TCCCCTCCTT
  CCTCGGCCTT CACAGAATCC CCAAGCTGGT GATTCTCACA GCTCCATCAA CCACTCACTT
  Y
  GAAATCCTGC CCTTAGCTCT TCGGTGACTA TGTAACCACC ATGGGAGAGA CCCTCACTTC
  TGTGTCCCTG CTCTCTGCCC ACTTGTATCC AGGTAAGCAC CCACTTCATA GGGTGCTTGC
  CGGGATCCAA ACCTCGGGAC TGGGGAGATG GCTCTGTCAG TAAAGTGCTT GCTATGAGCA
  AGGGCCAAAG TCTGATCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51118286	NES13854499	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36447220					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51118286	NES13854499	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:52522307 () rs orientation: forward

Symbol	Name	Function Class
D5Dcr65	DNA Segment, Chr 5, Derry C. Roopenian 65	1682 bp proximal
Rr611420	regulatory region 611420	1164 bp distal
Rr611421	regulatory region 611421	869 bp distal
Sod3	superoxide dismutase 3, extracellular	Intron
Tssr46168	transcription start site region 46168	1042 bp downstream
Tssr46169	transcription start site region 46169	1010 bp downstream
Tssr46170	transcription start site region 46170	985 bp downstream