rs36447691 SNP Detail

Summary

• ID
  rs36447691
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40368896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAAATCCC CGTGAGTTCG
  AGGCCAGCCT GGTCCACAGA GGGAGCTCAA GAACAGCCAG GGCTAGTCAG AGAGAGAGAA
  AGAGAAAAAA AAATCCACTT TAAAATAGCA TATACCCCTA CAGGTCAATA AGACATCTGA
  GGTAACAGCT GTCTGTCATG TCCTGCATTG ACACATGGGA AGCTAAGACA TCCTGCCATT
  M
  ATTATGCAAC CTCCTTGAGG CTGTGAATAA AAAGGAAGTG CATCTGGTGA AGGGCCAAGG
  TCCGGTTCAC CCTAAGCGAT GTCAGAGTAT CAGTCCCTTT CCTGACCCTT CACATCCGGC
  TGCTGGCTTG CACATGATTC ACTATCACTC TATTTTAACT CCCGGTGGCA GAGAAAGGAG
  AAAGCTCTAG TCATCAGGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50677570	NES14010731	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36447691					SNP	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677570	NES14010731	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40368896 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21594	CpG island 21594	1233 bp distal
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676840	regulatory region 676840	1346 bp distal
Rr676841	regulatory region 676841	1744 bp distal
Rr676842	regulatory region 676842	1081 bp proximal
Rr676843	regulatory region 676843	1452 bp proximal
Tssr84450	transcription start site region 84450	1690 bp downstream
Tssr84451	transcription start site region 84451	55 bp upstream
Tssr84452	transcription start site region 84452	83 bp upstream
Tssr84453	transcription start site region 84453	824 bp upstream
Tssr88938	transcription start site region 88938	1823 bp upstream
Tssr88939	transcription start site region 88939	1788 bp upstream
Tssr88940	transcription start site region 88940	1756 bp upstream
Tssr88941	transcription start site region 88941	1467 bp upstream
Tssr88942	transcription start site region 88942	1452 bp upstream
Tssr88943	transcription start site region 88943	1424 bp upstream
Tssr88944	transcription start site region 88944	1376 bp upstream
Tssr88945	transcription start site region 88945	1359 bp upstream
Tssr88946	transcription start site region 88946	1263 bp upstream
Tssr88947	transcription start site region 88947	1234 bp upstream
Tssr88948	transcription start site region 88948	1204 bp upstream
Tssr88949	transcription start site region 88949	115 bp upstream