rs36449318 SNP Detail

Summary

• ID
  rs36449318
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40367948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTGGCTAA GCAGCTCTGG
  TTAGCAAACT CCCTGTTTTT TTTTCCCCTG GGGGAGGGGA ATCAATGGAT TTAGCCCTCC
  CTCGCAGACC ACCCAAGATA CAGGGTTGAA GGAAAACTGG GTGACTTTTC AGCCAAATCT
  CTCTCCTAAG AAATGCGCGT TCTCCGAGTT GTTTGGAGTG CTGACCAGGA AGACAGGGCA
  Y
  ACATAATCAG AAGGAAAATG GAAAGTTCCT GGAGGCTGCT TCCAAAATGG CAAGCTGGGA
  AGAAAAGACA GTTCTGTAGA ATAAGCTGAG GACACCAGAC ACGGACACAA AGACACACGA
  TAGGGTGGAA AGACACAGGA CACACAGGAC CATTAAGGGA AAGATACTGG ATACATGGTG
  TGTGGCCTGG CCAAAACTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50677579	NES14010806	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	C	T	T	T	C		T	C	C	T		C
ss136330448	ENSMUSSNP6340260	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
ss322916250	CHEV_9_40264237	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36449318					SNP	C	C	C	T	C	C	C	T	T	T	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677579	NES14010806	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40367948 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21594	CpG island 21594	285 bp distal
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676839	regulatory region 676839	1227 bp distal
Rr676840	regulatory region 676840	398 bp distal
Rr676841	regulatory region 676841	796 bp distal
Tssr84449	transcription start site region 84449	1331 bp downstream
Tssr84450	transcription start site region 84450	742 bp downstream
Tssr84451	transcription start site region 84451	1003 bp upstream
Tssr84452	transcription start site region 84452	1031 bp upstream
Tssr84453	transcription start site region 84453	1772 bp upstream
Tssr88934	transcription start site region 88934	1268 bp upstream
Tssr88935	transcription start site region 88935	1217 bp upstream
Tssr88936	transcription start site region 88936	1196 bp upstream
Tssr88937	transcription start site region 88937	1132 bp upstream
Tssr88938	transcription start site region 88938	875 bp upstream
Tssr88939	transcription start site region 88939	840 bp upstream
Tssr88940	transcription start site region 88940	808 bp upstream
Tssr88941	transcription start site region 88941	519 bp upstream
Tssr88942	transcription start site region 88942	504 bp upstream
Tssr88943	transcription start site region 88943	476 bp upstream
Tssr88944	transcription start site region 88944	428 bp upstream
Tssr88945	transcription start site region 88945	411 bp upstream
Tssr88946	transcription start site region 88946	315 bp upstream
Tssr88947	transcription start site region 88947	286 bp upstream
Tssr88948	transcription start site region 88948	256 bp upstream
Tssr88949	transcription start site region 88949	820 bp downstream