rs36449462 SNP Detail

Summary

• ID
  rs36449462
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:101204071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGGTCTG TAGAGATGGC
  TCAGTAGTTA AGAGCAAATG TTGTTTTTGT AGAAGACCTG AGTTAGAGTC AGATATTGGG
  CAGCTCAAAA CTATCTGTAA CTCCAGCTCC AGGAGATCAT GCCTTCTTAT GGCCTCAGAG
  AATACATGTA CACACACATG ATTAAAATTG CTTGCTTTAG TCTGACCTTG AAAGTTTCTC
  Y
  GTGGTTCCTT GCTCTCTCAG CACCAGCTTA GCTCTAACTA ATTTTATATT TAGTCAACTA
  GCACTTTGTT GAGTGGTTCA GGGCTCCAGT TACCTTAATA ACAGGAATCA ACACTCTAAA
  TAGCTGCAAA GAGTGCTTCA GACACTATAA ATATCTACCC CTATTGGGTA GGTTATTAGA
  TTGGCATTCT GGCTCACAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss50784761	NES14209260	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C		C	C		T
ss323149592	CHEV_9_101229202	CHEVERUD	SCREENING_POP	f	SNP						C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs36449462					SNP	T	T	T	T	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50784761	NES14209260	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:101204071 () rs orientation: forward

Symbol	Name	Function Class
Rr198413	regulatory region 198413	1530 bp proximal
Rr202333	regulatory region 202333	1241 bp distal
Rr202334	regulatory region 202334	739 bp distal
Rr206996	regulatory region 206996	within coordinates