rs36449507 SNP Detail

Summary

• ID
  rs36449507
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:18710603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTGG CAGATGGTAG TTTCAAGATG
  Y
  TCCCGGTGTG AGAAATTTGT GACTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss50685036	NES13607138	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	T	C	T	T	C		C	T	C		T
ss146149703	ENSMUSSNP6538807	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
ss325733605	CHEV_19_18807729	CHEVERUD	SCREENING_POP	f	SNP												C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs36449507					SNP	T	T	T	C	T	T	T	C	T	T	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50685036	NES13607138	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:18710603 () rs orientation: forward

Symbol	Name	Function Class
Gm23238	predicted gene, 23238	335 bp downstream
Gm50202	predicted gene, 50202	within coordinates
Gm59201	predicted gene, 59201	1874 bp upstream
Tssr155457	transcription start site region 155457	1799 bp downstream
Tssr155458	transcription start site region 155458	496 bp downstream