rs36449699 SNP Detail

Summary

• ID
  rs36449699
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:88530705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTAGGGCT GAAGGGCCAA
  GAGGCCAGGG GCCAAGAGAC ACGTGGCAGC ACCCAAGTTT AAAGCACACA GACGAAAGAG
  ATGCAAGCCG GGGATCACCA AGGGAAGCTA ATGGCATAGG TCACGAAGGG AAAGGCAAAG
  GACGGACTGA TGGACAAGAG AGCAGTGTTA GACCCAGAAA GCAGCATGCA CCCTGAGGGC
  R
  GTCCTGTTCC CAAAGCAGGT CGGACACTGG CCATCCGCCT CTCCTCCAGC TAGTCGGCTC
  ATTTTACCCC CTCATTCCAA AAACCCAATT CTCATCCTTC TGGATTTGAT ACACAGCACA
  GACATTCCAC TCTCAACAAG CTGCGAGCCT CCAATGGGAC TTGGCATCCT GTGCAGGCTA
  GTGTGTGATG GATCCGTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50598731	NES14052515	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G		A	A		A	A	G		A
ss145451920	ENSMUSSNP3145491	ENSEMBL	ENSEMBL_Sanger	f	SNP	G				A
ss322761674	CHEV_8_90327976	CHEVERUD	SCREENING_POP	f	SNP								G				A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36449699					SNP	G	G	G	G	A	A	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50598731	NES14052515	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:88530705 () rs orientation: forward

Symbol	Name	Function Class
Tssr82324	transcription start site region 82324	313 bp downstream
Tssr82325	transcription start site region 82325	334 bp downstream
Zfp423	zinc finger protein 423	within coordinates