rs36450108 SNP Detail

Summary

• ID
  rs36450108
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87825618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATACATGAC TTTTGTCGAG ACAGGTCACA TATAGCCCAG
  GACACACACT AACTGTAGTG GAGGAGACCC GTTAACCGAC TCTGCCAAGT GCTGAGTTCC
  W
  GCTGTAGACG TTCCTGATTG GTTTTTTGTT TTGTTTTGTT TTTGAAGTAG GATCTTCTTA
  TTGGTCTCAA ACTTAAAATT CTTTTGCCTC AGTCTCTTAA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51575531	NES14667391	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36450108					SNP	A	A	A	A	T	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51575531	NES14667391	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87825618 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13346	CpG island 13346	1044 bp proximal
Gm64606	predicted gene, 64606	114 bp downstream
Mrpl24	mitochondrial ribosomal protein L24	1195 bp upstream
Rr367453	regulatory region 367453	942 bp upstream
Rr579572	regulatory region 579572	1111 bp distal
Rr579573	regulatory region 579573	655 bp proximal
Rr579574	regulatory region 579574	1082 bp proximal
Rr579575	regulatory region 579575	1263 bp proximal
Tssr29862	transcription start site region 29862	1179 bp upstream
Tssr29863	transcription start site region 29863	1204 bp upstream
Tssr29864	transcription start site region 29864	1217 bp upstream
Tssr29865	transcription start site region 29865	1256 bp upstream
Tssr29866	transcription start site region 29866	1349 bp upstream
Tssr29867	transcription start site region 29867	1382 bp upstream