rs36450221 SNP Detail

Summary

• ID
  rs36450221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:7194152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTCCAGC CCCCAGACTC
  TTGTTTTTGA GACAGAGTCT CAGTATGTTG CCCAAGCTGG CCTGAATTCC CGAGCTCTGT
  TTTCATGCCT CAACCTCCCA CTAAATGGGC GTAAGAGAGG GCATGGCTTG GTTGTCACTG
  TTTCTTCAGT GGCAGTGCTT TGGTTCTACC CCTAATTCAA TGCCCAGATA TCTGGATTCA
  Y
  GACCCATTGT CACTTAAAAC AGAAGAGCTC CAAAAAAGGG AGGGATGGGG GGGCCTAGGC
  TGCGGTGTAG TATTAAGAAA GTGCTTGCCT AACACAAAGT CCCGGGCTTG ATCCCCAGCA
  CCACATAAAC CACAAGTGAT GGCACAGGCC TGTTATCCCA GCACTAAAGA GATTATCGCT
  TCAAAGTCAA ATGTGGTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50592954	NES13646660	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36450221					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50592954	NES13646660	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:7194152 () rs orientation: forward

Symbol	Name	Function Class
Cox8a	cytochrome c oxidase subunit 8A	within coordinates
Cpgi10550	CpG island 10550	344 bp proximal
Gm59070	predicted gene, 59070	within coordinates
Rr405837	regulatory region 405837	677 bp upstream
Rr543610	regulatory region 543610	1797 bp distal
Rr543611	regulatory region 543611	819 bp proximal
Rr543612	regulatory region 543612	898 bp proximal
Rr543613	regulatory region 543613	1184 bp proximal
Tssr154738	transcription start site region 154738	1074 bp upstream
Tssr157942	transcription start site region 157942	1394 bp upstream
Tssr157943	transcription start site region 157943	736 bp downstream
Tssr157944	transcription start site region 157944	742 bp downstream
Tssr157945	transcription start site region 157945	762 bp downstream