rs36451001 SNP Detail

Summary

• ID
  rs36451001
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:6917855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAC CGGTTCCCGT GGTTACCTGC
  R
  CAAAGTAGAG GTTCATAAGC GTCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50594186	NES13645571	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36451001					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50594186	NES13645571	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6917855 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bad	BCL2-associated agonist of cell death			1374 bp upstream
Cpgi10534	CpG island 10534			253 bp proximal
Gm59107	predicted gene, 59107			479 bp downstream
Gpr137	G protein-coupled receptor 137			Coding-NonSynonymous
				Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
				Splice-Site
Rr405833	regulatory region 405833			875 bp upstream
Rr405834	regulatory region 405834			1213 bp upstream
Rr405835	regulatory region 405835			1917 bp upstream
Rr543509	regulatory region 543509			1902 bp distal
Rr543510	regulatory region 543510			342 bp proximal
Rr543511	regulatory region 543511			1377 bp proximal
Rr543512	regulatory region 543512			1953 bp proximal
Tssr154697	transcription start site region 154697			1388 bp upstream
Tssr154698	transcription start site region 154698			1414 bp upstream
Tssr157902	transcription start site region 157902			941 bp downstream
Tssr157903	transcription start site region 157903			1334 bp downstream
Tssr157904	transcription start site region 157904			1919 bp downstream