rs36451687 SNP Detail

Summary

• ID
  rs36451687
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10609659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAAATGG GGAGGAAGCA
  CCAAATGAAC AAACATTAGT CCTGGAAGAT GGACGGCTCA TATAGGAAAG ACTCAACTGA
  AGCCCCAGGA CCGAACAGGG CAAGGAAGAG CAAATGAAAC TAAAGGACCA ACAGCTGCTT
  TGATGGGAAG GTAGATGCCA GAGGACTGAA GACACTGTAG GGAGATGGAA TGCTGGGCTG
  R
  CTCAGAAAAG GGTGTAAGGG CCGTGCAGTG GTGGCGCTTG CCTTTAGTCC CAGCACTTGG
  GAGGCAGAGG CAGGCGGATT TCTGAGTTCG AGGCCAGCCT GGTCTACAGA GTGAGTTCTA
  GGACAGCCAA AGTACACAGA GAAACCCTGT CTCGAAAAAC CAAAAAAAAA AAAAAAAAAA
  AAAAAAAAAA AAAAGAAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50601076	NES13642684	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36451687					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50601076	NES13642684	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10609659 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10616	CpG island 10616	1877 bp proximal
Rr362969	regulatory region 362969	1541 bp proximal
Tssr155079	transcription start site region 155079	1928 bp upstream
Vwce	von Willebrand factor C and EGF domains	1923 bp upstream