rs36452409 SNP Detail

Summary

• ID
  rs36452409
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:66483841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTCCCTT TTCCACTTTT
  ATTTTTTCAG AAACATAATT TTTACCGTCG TAATCGTAAA CTATGCTAGG CCAGCATTCT
  TGTCATCTTA TCACGTTTCT ACTCAGTCTT AGTAAGTGTA ATGGTAAGGT CTCAAAAATC
  TACAGCTCTC TAGATGCCAA CCTACATCTT CACTCATTCT CCTCATACGC TCCCTTCAGC
  Y
  GCCTCTTGGA CTGCATGCCC GAGAGCCTCG TGGGAATCAC AAGTTCAAGG CATATTACAA
  ATGACTAATA GGCGTTACTG AACCTGATCA CCCTCCTAGC ACCCCGATGG CAAGGAATCT
  CACCCCATCA CCTTCAAACT CCCCTCAGCT CCCCATCTTT CCTGTTGCCC CACTTTGAAA
  TCCAAGTCAC TACTGCATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50968230	NES13941253	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36452409					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50968230	NES13941253	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:66483841 () rs orientation: forward

Symbol	Name	Function Class
Rr665	regulatory region 665	within coordinates
Rr811	regulatory region 811	448 bp distal
Rr577850	regulatory region 577850	237 bp proximal