rs36452584 SNP Detail

Summary

• ID
  rs36452584
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44837309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCACTTTAA TATTATTTTT TAAAGACAGG
  GTTCCTCTGT GTATCCGTGG CTCTCCTGGA ACTTGCTCTG TAGAGCAGGC TGGTCTCGGA
  GATCCGCCTG CCTCTGCCTC CCCAGCACTG GGATTAAAGG CATACGCCAC CATCACCATG
  M
  AGCTTTTTAA AACGACATTT CATGTCTTTC ACCATGAATA AGCGCATCTT GACAGTTTTT
  CTATGGGGCA GCCTGACTTT GTCTGTCCCT TGAGGGCAGG GGTGTGTTCT GTTGGCTGGG
  GCTGGACCCC CCACCTGCAT CAGGCTCTCT GCAAGCTCAC TGAGTAGACA ACACAGCAAG
  ACACAGCAAA GGAGCAGAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51480580	NES13972244	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	A	A	A	C	A	C	A
ss149131029	ENSMUSSNP1713187	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36452584					SNP	A	C	A	A	A	A	A	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51480580	NES13972244	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44837309 () rs orientation: forward

Symbol	Name	Function Class
Gm31097	predicted gene, 31097	1013 bp upstream
Kash5	KASH domain containing 5	within coordinates
Rr380751	regulatory region 380751	876 bp downstream
Tssr72334	transcription start site region 72334	815 bp downstream
Tssr72335	transcription start site region 72335	1669 bp downstream
Tssr72336	transcription start site region 72336	1762 bp downstream
Tssr72337	transcription start site region 72337	1786 bp downstream
Tssr72338	transcription start site region 72338	1909 bp downstream