rs36453899 SNP Detail

Summary

• ID
  rs36453899
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:17815696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAG GGAGCGGCCA TTCGGTCATT
  Y
  GTTTCTGTGT CCTTATCTCC AAGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss50679583	NES13609758	PERLEGEN	MM_PANEL2	f	SNP	C			C	C	T		T	T
ss146130726	ENSMUSSNP218907	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs36453899					SNP	C	C	C	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50679583	NES13609758	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:17815696 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10666	CpG island 10666	467 bp distal
Pcsk5	proprotein convertase subtilisin/kexin type 5	700 bp upstream
Rr544885	regulatory region 544885	711 bp distal
Rr544886	regulatory region 544886	735 bp distal
Rr544887	regulatory region 544887	210 bp distal
Tssr158513	transcription start site region 158513	690 bp upstream