rs36454503 SNP Detail

Summary

• ID
  rs36454503
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:11313680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTGCCTT TGACACTCAG
  TCATTTTGTG TGCTTTCCCC GGAAGTACTC GTGATTACAC AGGGTGTGAG TTTGCAGTAA
  TTACAAGTAG TAGGAAAACG AAGAGCTGCT CTGCTTCCCC TTTCTGAAGT TTGAGGTTTG
  GAAAAATAAC ACAAAATAAA ATCATCTCAC GAAACAAATT TGGTCAAGTA GGGAACGATT
  Y
  CTTGCATTTC TATATTGCAT TAAGTCTGTC CCCTTCTGAA TGAGAGATAT TAGAATTCAC
  CGTCTGACTT ACAGAATTAA TGAGGAAGGG AGTAAGGAGT TCATGAAAAT CAGAGTTATT
  GGATTTGAGA ACATTTGGAC TTGAGAGAGC TTATTGATAT GGAGATAATT TCCAGCTGGT
  TGGAAACCAC TTTTAAAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50596330	NES13638262	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36454503					SNP	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50596330	NES13638262	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11313680 () rs orientation: forward

Symbol	Name	Function Class
Ms4a7	membrane-spanning 4-domains, subfamily A, member 7	170 bp upstream
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates
Rr544316	regulatory region 544316	within coordinates
Tssr158335	transcription start site region 158335	1917 bp upstream
Tssr158336	transcription start site region 158336	247 bp upstream
Tssr158337	transcription start site region 158337	229 bp upstream
Tssr158338	transcription start site region 158338	192 bp upstream