rs36454899 SNP Detail

Summary

• ID
  rs36454899
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:108574625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGAGAAT CTTACTAGGT
  ATAGCTTCAC AGTGTTAGAC CGTGACCTTC TTCAGTCCAG GAGCTGTGTA CCTGTGACTA
  GGAAATGGTG GCAGGGGACC ATAGAGGAGT GTAGCTGTTT AGTTTAGTTT AGTTTAAGGG
  TGGTCTCGAG ATTTTAGAAT CCCAGAAAGC TTATTGGTAA TTCTGTGGCA TCTTAAATAA
  R
  AAATTCTTAC AGAACTTGAA TCAATGTTTC TAATGAATTC TCAAGTGATT TTGGTACTAC
  AGGTTGCGGG AGCAGGCATT TAGATCCATT GAGTTAGGAA AGGTAGATTG ATTTGACTAT
  CACAGAGATA AGAAATTCCA GGCAAAGACA GGGAGGGGGA ATCGGTACAA AAGACATCAG
  GCAGTTCAAG TTCAACCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51047855	NES14372989	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	G	A	A	G	G	A	A		A	G	A	G
ss138676807	ENSMUSSNP3867761	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36454899					SNP	G	G	G	A	G	G	A	A	G	G	A	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51047855	NES14372989	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:108574625 () rs orientation: forward

Symbol	Name	Function Class
Evl	Ena-vasodilator stimulated phosphoprotein	Intron
Rr472572	regulatory region 472572	1584 bp distal
Rr472573	regulatory region 472573	1955 bp proximal
Tssr114988	transcription start site region 114988	1423 bp downstream