rs36455407 SNP Detail

Summary

• ID
  rs36455407
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:68471271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATATTTA TTGAGGGGAG
  AGTACTGTTG TTTTTCTCTA CTTAACGTAC TGCAAAGTAA GCTTATCTAT TGGAGGTGGT
  AACTTTGGGT TTATGTTCAA GCTAAGCCAC CCCTTTGCTC CAGTCCTTCA TGACACCAGA
  GAGCATGAAT TGAGGATTCG AGGAGAGTCC TGGTTAATGA TAAGAACACA GACAAATCTG
  Y
  CTTCCTTAAT GGAGTGTTTA TATGTTCTCC AGCAATCTGG GCTCACTTGA GCAAAATATG
  ATGCAGTCGC CCAATAATGT GAAAATCTGG AGACTGCCTG GGACCTTTGA TGGAGTTTGG
  ATAGGGTTCA GGAGATCCTC TGAGAACTTA GGTGTCAAAA AAATCAGACA TGAAAAGAGA
  AGTTGTACTT TGCATAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50460634	NES13443517	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36455407					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50460634	NES13443517	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:68471271 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10187	CpG island 10187	594 bp distal
Mc5r	melanocortin 5 receptor	within coordinates
Rr393851	regulatory region 393851	1010 bp downstream
Tssr151786	transcription start site region 151786	683 bp downstream
Tssr151787	transcription start site region 151787	654 bp downstream