rs36457474 SNP Detail

Summary

• ID
  rs36457474
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114271151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACTGCATGA CCTCAGGCTT AGAGAGCCAC ATCACTCTGT
  AACTGTTCCT CTCATCTGCC ATGGCTTGAG CCAGGACCTC TGACCTGTGC CCTTTTTTTT
  W
  TTTGGAGAAA GATCTACGTA CGTCATCAAG ACTGGCTTTG AACATACTCT AGTTCGGGCC
  TACCTTAAAT TTCTGGTCTA GCTTGGTAGT GGTGGCGCAC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ
ss51798660	NES14715489	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ
rs36457474					SNP	A	A	A	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51798660	NES14715489	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114271151 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16310	CpG island 16310	1236 bp distal
Gm73235	predicted gene, 73235	within coordinates
Rr617831	regulatory region 617831	1087 bp distal
Rr617832	regulatory region 617832	983 bp proximal
Rr617833	regulatory region 617833	1486 bp proximal
Tssr48058	transcription start site region 48058	1912 bp downstream
Tssr48059	transcription start site region 48059	1870 bp downstream
Tssr48060	transcription start site region 48060	861 bp downstream
Tssr52696	transcription start site region 52696	1493 bp upstream
Ung	uracil DNA glycosylase	within coordinates