rs36457621 SNP Detail

Summary

• ID
  rs36457621
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:140703301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACGCCATT GACCCGCCCC
  AACCATAAGC CCCGCCCTAT CCGCCTTACC CACAGATCGT CACTTCAGTC CACCCGAAAC
  CCCGCCTTTG AACATAGTCC GACCCCAGAC TGCCCTTCCA GAGGTCAGGG GCCCTAGACC
  AATCCCAGAC GATGCCCCCA AGCCAGCGAG CCACCCCTCG CAGAAGCAGT CTCGAGTTGA
  W
  GTTACTGCAT TCAGCTTTGT CTGGGCGAAA GGAGGCGTGG TCTCTGATGG GGAGAAACAC
  CCACACTAGG GAAGCTAACT CTCGCCTCCA AGGGAGCTCA CCAGAGAGGT GCAAGGACGG
  GGCGCAAAAG GATGGATGGC TTGGAGGCAG CCGTTCGTGG CGTTATTGGT AAGGGATAAG
  CCGGTAGCTA GCCGACCAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss50482333	NES14107141	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs36457621					SNP	A	A	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50482333	NES14107141	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140703301 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19919	CpG island 19919	within coordinates
Gm33560	predicted gene, 33560	within coordinates
Gm73068	predicted gene, 73068	92 bp upstream
Gm73077	predicted gene, 73077	within coordinates
Rr400707	regulatory region 400707	57 bp downstream