rs36459329 SNP Detail

Summary

• ID
  rs36459329
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86586544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCTTCAA ATGTGTCCAA
  ATATCTGCCC ACCATTATTG CATAACACCA AGAGGTGTTT ACACACACGT ATGTCCTTCA
  GCAACCTGTG GTTAGTGACT GACACACCAC ACCCAGGCCT TGCTACTGTA TCCCCAGCCC
  ACAACCTGTG ATATCCGGTA GCTAGCAATG GCCTCCTTGT TCTCCAGGCT CTTCCTCTCA
  R
  AGGGCAGACC CTGTAGTCAT CCCTTGGCCT TTGGACCTGG CCATGTGAGG CTAAGCTCTA
  TACGTTCTTG GGCAGGAACC AGATTTTCCT CTTTCTAGAC ACTTCCACAC CTCTGCCCTG
  ACCAGACCTG GACAATGCAG GGTTGATGGG TCAGCCAACT GATGGGGCTG CCAGAGAGCC
  ACTCTGAAAT GTTTCCTAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51751741	NES14803833	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36459329					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51751741	NES14803833	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86586544 () rs orientation: forward

Symbol	Name	Function Class
Gm67306	predicted gene, 67306	1860 bp upstream
Gm67317	predicted gene, 67317	205 bp upstream
Rr150658	regulatory region 150658	within coordinates
Rr368114	regulatory region 368114	1755 bp downstream
Tssr1919	transcription start site region 1919	1776 bp downstream
Tssr57493	transcription start site region 57493	1716 bp downstream
Tssr57494	transcription start site region 57494	within coordinates
Tssr61820	transcription start site region 61820	1924 bp upstream
Tssr61821	transcription start site region 61821	1908 bp upstream
Tssr61822	transcription start site region 61822	1884 bp upstream
Tssr61823	transcription start site region 61823	1841 bp upstream
Tssr61824	transcription start site region 61824	236 bp upstream
Tssr61825	transcription start site region 61825	200 bp upstream