rs36459502 SNP Detail

Summary

• ID
  rs36459502
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:83105436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGTCAATCT TGGTCTGACC ACACACGACA GAATTTTGTC
  TAGAGGTCAC ACAGAAATTA CAACAGAGAA TAACAGTGAA AGATATGCAT TTACCAATAA
  R
  ATGCCAGAGC TTAGTTTTCT GGGTGTTTGT TTGCTTGGTT GATTGGTTTG GTTTTGCTTG
  GCTTTGCTTT GCTTTGCTTC TTTTTATAGC TCCCTACAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51971141	NES14983042	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	A	A	G	A		G	A	A	G		A
ss145303807	ENSMUSSNP6072547	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss322735853	CHEV_8_84902706	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36459502					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971141	NES14983042	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:83105436 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Il15	interleukin 15			Intron
				Noncoding-Transcript-Variant
Tssr81957	transcription start site region 81957			247 bp downstream
Tssr81958	transcription start site region 81958			264 bp downstream
Tssr81959	transcription start site region 81959			1273 bp downstream
Tssr81960	transcription start site region 81960			1458 bp downstream
Tssr81961	transcription start site region 81961			1494 bp downstream