rs36459534 SNP Detail

Summary

• ID
  rs36459534
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:188753671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTAGGTGA AGCCCTGATC
  AAATGTATTG CTATGTCAAG GGGGACGTGC CTCGGACCCG TGAGCATGGC CATTTCAAGA
  GATAAGCACC TAAGACCCAT GAGCAAGGAC ATGTCATAAG ACAGGTGCCT CAGACCCATG
  AGCAAGGACA TGTCAAGGGA CAGGTGCCTC AGACCTGTGA ACATGGCTAT GTCAAAGGAC
  R
  GGTGCCTCAG ACTCATGGAG TGGCAGAGCC TTCCTCAGGG GTGAGTATGA GTGTTGATAG
  TGTATGCAGA AAATCTCCAC CACAGCTTTC TCACCTCAGA TGTTACAGCC TGAAGACTGC
  TCCCCTATAG AGACAGCTCC TACCCAGATT AGACAAGCCT GCCTCCTTGT TTAGCATTTA
  TAATAGCTCC AGCTTCCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51419722	NES14448904	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36459534					SNP	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51419722	NES14448904	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:188753671 () rs orientation: forward

Symbol	Name	Function Class
Rr425741	regulatory region 425741	1854 bp proximal
Rr425742	regulatory region 425742	1964 bp proximal