rs36459575 SNP Detail

Summary

• ID
  rs36459575
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68315330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTGGATT TATCTGTATT
  TGTTTGCTGG CTGATTTGGT CCTTTCCCTG GAGTTTAATG GAAGCAGGGA GCTTTGCCCA
  GCAACCTGCA GGAGAAACAG TGTTTCACTC TCAACCCAGT GCCCTTCTCC TGCAGCAACA
  TCAGCAGCAC TGCAGAAAGA GACTGGCTAG TGTAGGGAGG GGCCGAGAGA CACTGCTTTA
  S
  TGTGCATTTA CTCAGTCAGT GTAATACTTG CGTTTCTACT GTTAATAACA CAACAAGACC
  ATTCTCCTAT TTACCTCACA AATTGCAGTC TGAAAGGGTT CAGAGTAGCG TAAAATGTAT
  GAAAATGTCT CTGGTGCATT TTCAAAGAGG ACAACCACAG TTCCTTTTCA GATTCGCTTC
  AGTGTGGGAA TGAAAACCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50975042	NES13920843	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36459575					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50975042	NES13920843	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68315330 () rs orientation: forward

Symbol	Name	Function Class
Gm10723	predicted gene 10723	within coordinates
Iqschfp	Iqcj and Schip1 fusion protein	within coordinates
Rr577995	regulatory region 577995	1909 bp distal
Schip1	schwannomin interacting protein 1	within coordinates