rs36459940 SNP Detail

Summary

• ID
  rs36459940
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:70874074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCTTTCG GCTCACTGTC
  ATGAAAATAA AGGTAGTAAA GCTGAAATGA ATTATGGCGA TTTTAAATCT GACCGATTTC
  GTGATTGGTA GGCAAGCCAG CATGGAGGCA TTTACATTTC CTGGGCTTGG CTGGCTCTCT
  CGGTGCCCTT TGCGAGCTGC ACAGAGATCT GAGCTGTAAG TCTGGTTATA AGCTTATGCA
  M
  GCCCTTAGTC ACCCTCTGGA TGAGAAGCAA CCCAGGCTCA AGGCTGTACA TTCTATGCTC
  CACTGTGGAT TTCTCTGGAG TAATTCAGCT AGCCTATGAT TTTTTTTTTT TTGAGGGAGA
  AGTGATTGAG CAGATTTATT TCAAAGCACA TTTACATTTG AAAACAGGGG TTGATCAGCT
  AAAAAGAGCT ATTCTTGAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50736494	NES14247180	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36459940					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50736494	NES14247180	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:70874074 () rs orientation: forward

Symbol	Name	Function Class
Gm32074	predicted gene, 32074	146 bp downstream
Rr682462	regulatory region 682462	1465 bp distal
Rr682463	regulatory region 682463	579 bp distal