rs36459950 SNP Detail

Summary

• ID
  rs36459950
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97966695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATAGACGG CAGCCTGCCT
  AGAACTCCAG TGTTCACAAG GTGGAGATGG AATTCCTGGA GCAATCTAGC TAGGCAGACT
  GGGTGTGCGG GTGACTTGTG AGTTCACCTG GGAGATCCCA CGTCAGGGAG TAAGGGCTGC
  CATGGAGACA GCACAGCCCC ACAGCGACCT AAAGGAAAAT CAGAATTGTT GTGCGCACGC
  R
  GAATGACTAC AGTTGGATGT CACTGAAGAG AGGGAGAGAA AGAGAACACT ATTTCCAGTG
  GGCAGTGGTG GTGCACACCT TCAGTCCTAG CTCAGGAGGC AGAGGCAGGT GGACCTCTGA
  GTTTGAGGGC AGCGTGGTTA CAGAACAGCC AGGGCTATAC AGAGAAACCT TGTCTCTAAA
  AACAAGACAA AATACACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51762600	NES14550099	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36459950					SNP	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51762600	NES14550099	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97966695 () rs orientation: forward

Symbol	Name	Function Class
Gm25668	predicted gene, 25668	940 bp upstream
Rr305744	regulatory region 305744	906 bp proximal
Rr315538	regulatory region 315538	95 bp distal
Rr315539	regulatory region 315539	1506 bp proximal
Rr316424	regulatory region 316424	1646 bp distal
Rr370004	regulatory region 370004	1097 bp downstream
Senp1	SUMO1/sentrin specific peptidase 1	within coordinates