rs36460520 SNP Detail

Summary

• ID
  rs36460520
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:126767716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCCTCCT GTGGCTTGCA
  CCCCAGCTAG CAACTTTGCT ATGATGCTCT GCCTCACCGT AATCCCACAA CAATGGAGAC
  ATGCATCCAT GAATTGAAAC CTTGAGCTGA AATAAAGCTT TTGGTCCTAA GTTGTTGGTC
  ACAGATGTTC TGCTGCAGCA ATGAATAGCT GATTAAACAC CATCTAAAAG AATCCCCACT
  Y
  GCACAGATGA CAGCTGGAGC TTAGCTTTGA AGAATTCTCT CAACAGAAGC TAAGAGGCCA
  TCAACAGAAG CCCAAGTGAT GCTGATGACA GGGAAGCAGC CTTCCTTCAC ATTCCCAACC
  TGATAGAGAC TTAGTCAGGG TTCTCTAGAG TTGTTAGGAA ATGTCTCTCT ATATTGAGGG
  AATTTGTTAT GATGACTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51411621	NES13709768	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	T	C	T		C	T	T	T
ss133625940	ENSMUSSNP5577625	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36460520					SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51411621	NES13709768	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:126767716 () rs orientation: forward

Symbol	Name	Function Class
Gm29788	predicted gene, 29788	1696 bp downstream
Gm67331	predicted gene, 67331	144 bp downstream
Rr638910	regulatory region 638910	1265 bp proximal
Rr638911	regulatory region 638911	1335 bp proximal