rs36461434 SNP Detail

Summary

• ID
  rs36461434
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:187996223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTATAACA CACAATAGAA
  TTATAAATTG ATAAATATCA ATTATACCAG AGTCATATAT TATTTATTCT TTTTATTTCT
  CATAGACTAG CTGAACTTTT GGTCCTAGCC TTATAGTCAA AAACTTTGAC TAGACAGGTA
  GCTTTCTGAA GGCGTAGGGC TGTTTTACTT ACCTTTCTTT TCTCAATAAA CATTTCACAT
  R
  ACAAATCGAA GATGTTCAAC AGTAGAGTTG AACATGCGGA CAGCACCCCA CCTCCCTCAC
  AGTACAGTCT TTGACCCACG TGGTGTCCCC ATCCTCAGAG GTTCTTAAGA GCTCCCCAGC
  TCTTGAGTCT GTTAAGGATG CCCTCGACGT GAATGGGAGT GAAGCTTCCA TGTGACCAAC
  TTTGGTTGGT GCAGTCGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51416318	NES14451703	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36461434					SNP	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51416318	NES14451703	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:187996223 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1191	CpG island 1191	560 bp distal
Tssr368	transcription start site region 368	1123 bp downstream
Tssr10681	transcription start site region 10681	1998 bp downstream
Ush2a	usherin	within coordinates