rs36461526 SNP Detail

Summary

• ID
  rs36461526
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:15216550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTTCCAG GATCGTCAGG
  GCTACATAAA GAGACATGTG TCAAACAACA GCAGCAACAA CAACAAACTC AAAGGCAGGT
  CTGTAAATCC AGAATGCACC CCACCCTAAG CTGAATCAGC AGTGAAGAAA TGGCCCCTTT
  GGCTGACACC AGGAAGACTT CAGAATAATC CTGCAGCACC AGGAGAAGTG CCCATCTTCC
  R
  CCTAGAGGGG ACTTCTCTCT TCCAAATATA TTGCACACAA TATATTGCTA ATTATTAGGT
  ACTTATGATA TACCACACTT TTACGATATA CTAGACTAGT AGGGTTCAAG CACAAGGCTG
  GCTTTACAGC TTTGCAAATA GTTCATTCAG TCACATAGGA CCCTATATTC ATACTGATCT
  AACCACACAC ACAGGTCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51990154	NES15006023	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36461526					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51990154	NES15006023	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:15216550 () rs orientation: forward

Symbol	Name	Function Class
4931406C07Rik	RIKEN cDNA 4931406C07 gene	within coordinates
Cpgi21368	CpG island 21368	493 bp proximal
Rr205988	regulatory region 205988	250 bp proximal
Rr401250	regulatory region 401250	726 bp upstream
Taf1d	TATA-box binding protein associated factor, RNA polymerase I, D	960 bp upstream
Tssr83860	transcription start site region 83860	958 bp upstream
Tssr83861	transcription start site region 83861	967 bp upstream
Tssr83862	transcription start site region 83862	998 bp upstream
Tssr88240	transcription start site region 88240	841 bp downstream
Tssr88241	transcription start site region 88241	862 bp downstream