rs36461660 SNP Detail

Summary

• ID
  rs36461660
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:31468087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGATAATT TTGGCATGCA
  GCACTCCCAG CGCCCAGTCC TATGATTAGA GAAAAATAAA GAATACTTAA CACATCTTCA
  CTGACTGTAA AGGTAAGCCT ATCAAAAAAA GCTGTTTAGT TTTGGAACAG AAGCTGCCCA
  GGACTGGTAA CACTCAGCTA AGTTACTGAT TGCTGCTAGC TTCTAGGAGA CAGTTCTCTT
  Y
  AAGAGCTCTA CCACTGGTGG GTGTACTGGC TAACTTGACA CAGGCTGGAG TTACCACAGA
  GAAAGGAGCT TCAGTTGGGG AAATGCCTCC ACGAGATCTA GCTGTAAGGC ATTTTCTCAA
  TTAGTGATCA AGTGGGGAGG TCCCCTTGTG GGTGGTGCCA TCTTGGGGCT GGTAATCTTG
  GTTCTATAAG AGAGCAGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51630451	NES14594925	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36461660					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51630451	NES14594925	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:31468087 () rs orientation: forward

Symbol	Name	Function Class
Marchf6	membrane associated ring-CH-type finger 6	Intron
Tssr133930	transcription start site region 133930	20 bp upstream
Tssr133931	transcription start site region 133931	within coordinates
Tssr133932	transcription start site region 133932	30 bp downstream