rs36462877 SNP Detail

Summary

• ID
  rs36462877
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:25278065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCACCGTGCT TCCTTGCCTA CGTTCCTGGG AGTTGAGATC
  TGATGGACTC AGGCTACCTT ACCGCATCGG GTAAGCTCAC CTCAGATGAT CTCATCGACA
  K
  CATTGCTTTT GACTTCTTTT AAGTCCGTTC TGATCCACAC GGGCGGCTTT GTTCAAGGGG
  GAAAGACATT TGGTACACAT GTGACGGCTT GAATATATG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss50736053	NES13577675	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	G	T	T	T	G		T	T		T
ss146282447	ENSMUSSNP6033498	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss325779926	CHEV_19_25375191	CHEVERUD	SCREENING_POP	f	SNP									G			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs36462877					SNP	T	G	T	G	T	T	T	G	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50736053	NES13577675	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:25278065 () rs orientation: forward

Symbol	Name	Function Class
Kank1	KN motif and ankyrin repeat domains 1	within coordinates
Rr364353	regulatory region 364353	within coordinates
Tssr155675	transcription start site region 155675	119 bp downstream
Tssr155676	transcription start site region 155676	109 bp downstream