rs36464097 SNP Detail

Summary

• ID
  rs36464097
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:22206234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTGCTTC CAGTCTACTC
  TGTAGGGCCA TGTTCTGTGG CCATGAATTG TCAGGCTGGT TTTCTTTCCC TTCAACTAGG
  GTACATGGTC TTTCTGGGGA TGTAGTCTAG GTTGACACTC ATGGTCTTTG AGAACTTGAA
  GTGCACTGTT AAAGAATTTT CTTTCTGGGC TTTAAGGTTT CCATTTTGAA ACTCTACAAA
  Y
  ACAGACAGTG CAGGGCAGTT GCCCATATAG ATGGTGCTAT GATTAAGAGC AAAGGGTGCT
  CTACGGACGA TTCTCCTTCG GTTCCAGGCC TCCACAGATG GGTTTGCCTC ACATCCACTG
  TTAACTCCAG TCCCTGGGAA TCAGGGCCCC TCTTCTGGCT TTCATGCAGA TAAAACACTC
  ATATACATAA AATAAAATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50650991	NES14032305	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36464097					SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50650991	NES14032305	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:22206234 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm18225	predicted gene, 18225			1008 bp downstream
Gm48627	predicted gene, 48627			within coordinates
Rr675181	regulatory region 675181			730 bp proximal
Zfp810	zinc finger protein 810			Intron
				Noncoding-Transcript-Variant