rs36464529 SNP Detail

Summary

• ID
  rs36464529
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109596125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGACCAGC ACACACTTTG
  TGGTTTTTAT GATCTTGCAG AGCTGAAGTC TGCTAATCAT GGAGGCTTTT TATTTGTTCT
  CTGGGTTTTT CAGTATTAGG ATTTGTTTGA TGTCATTAGC AATTTACACA TTTCATCAAT
  GGTAAATATC TGGGCCATGC ACTCCCTGAG GTGGGCACAT GCAGTCTGAG GGAGAAGGCA
  W
  TGTTAATGTC CTTGTTGTGA CTAAAGAACA GTTCCTGGTG GCACAGTCTT ATCTCCTCTA
  ACCTGAAAAG CCACAAAGGT TCTTGAATCT GAGATGAATA GGGGATGGTC TTCGTTTCTT
  CCTGGAACCT CGTTTTGAGA TAGTTCACTG TATTTACTGA AATATTACAA AACTTGGAGC
  GTAAAACCCC AAATTTGAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51054039	NES14376521	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36464529					SNP	A	A	A	A	A	A	T	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51054039	NES14376521	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109596125 () rs orientation: forward

Symbol	Name	Function Class
Gm24564	predicted gene, 24564	1383 bp upstream
Rian	RNA imprinted and accumulated in nucleus	within coordinates
Rr387772	regulatory region 387772	1730 bp upstream
Tssr115150	transcription start site region 115150	608 bp downstream
Tssr115151	transcription start site region 115151	402 bp upstream