rs36464651 SNP Detail

Summary

• ID
  rs36464651
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12655973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTGGGAC CCGCCGAGCA
  TGGCTTGCGG GAGGGGAGAG GGTGGGGCCC GTGCTTGTGA ACCCGGATCG GTGGTAACCA
  CAGGACCCGA CTCCATTATT TTGGTGAGAA AATGTGAGCC GAGCTGGTTG CCCTAGCTAA
  GAATCCACCG TCCATGGTTC CTGGGTTTTG CAGCCTAATT ACGGAGAGCG TGGACTGGAC
  K
  TCAGCACTAC TTAGATATGG CGGCGTCGGT CTCACCAAAG TTTCTGCGCA TGTGCGCCGA
  CTCAGAAGCC TAGCTAGTAC TTCAGAGGTC CGCCAGAAGA CGGGCGTGGC GCTGTTTCTA
  AAAGTGCGCA TGCTTTACCC GGCTCAAAGG GCGCCTCTCA TCCTAGCGCT TGATTGGTTG
  GTGAGCACGC TGTTTTCATC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51469130	NES13985214	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36464651					SNP	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51469130	NES13985214	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12655973 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18322	CpG island 18322	within coordinates
Gm57203	predicted gene, 57203	within coordinates
Rps5	ribosomal protein S5	250 bp upstream
Rr368230	regulatory region 368230	19 bp upstream
Rr642402	regulatory region 642402	within coordinates
Rr642403	regulatory region 642403	45 bp proximal
Rr642404	regulatory region 642404	330 bp proximal
Tssr64485	transcription start site region 64485	269 bp upstream
Tssr64486	transcription start site region 64486	908 bp upstream
Tssr70626	transcription start site region 70626	24 bp downstream