rs36465682 SNP Detail

Summary

• ID
  rs36465682
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:51641582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAATTCAG AAAAGAAGTC
  CACAGACAGA GCTGCTTTGA ACTCAGGGTT CATCAGGAAG CTCCTGTCAA CATATAGCTG
  TTTCCTAGAT AATGGAATGG GCAGAGAGTC AAACGGATAC TATGCTTCAA CTGACAGTGA
  AGAAGCAGCA GGATTGGTGG CAGCAGAAGT AGCTGTTGAC AGAATCTGAA AGTTAGTTCT
  K
  GTGTTTATAC CTCCATTTTC TAAATCCTAC ACCTGTACCA AAAGCAGTAT TTATCCAATG
  TTTGCTAGAG TAGGAGTGGC TGAGTTGGCA CCACAGAGCA AAACAAGAAA CATCACATGT
  GAAATTACCA AAGTGGCCAC AGCAGAGAGA TCAGCAATGC TAGAGACTGA CAAGACTTGA
  AAACTTGAGA AGCTACATAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51115402	NES13865355	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T	T	G	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36465682					SNP	T	T	T	T	G	T	T	T	T	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51115402	NES13865355	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:51641582 () rs orientation: forward

Symbol	Name	Function Class
Gm42614	predicted gene 42614	within coordinates
Ppargc1a	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	within coordinates