rs36466824 SNP Detail

Summary

• ID
  rs36466824
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:72834585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCATACGA GCCGAAGTGA
  AACGAGAGCA GAGGTTGTCT CCATTTTGCT TGCTTTGGAT CTCCAAGAGT CAGCACAAGG
  CCAACACGCA GCTCTAGGAA GAGTGAAGCC TTCGGTTTAT GTCACTGTTT ATAACAGACA
  CAGTATGTCA GATCTAGCTC ACGTCCATTT AGATTTCCTC ACTACGTACA CCACAGCACC
  R
  TGGGAATCCA CAAACCTTCG CAAAAGCAGC CGCTTGTTCC CTTGAGACAA TCACTGAAAG
  GAGCTGATTC CTGAATGTTG AAGATCCACC TTCTTGTTTA AAGAAGATAA TTAATCAGAA
  ACACTCAAGA GAGGAAAAGA TGGAAGAAAA GAGGGGGCTA CGAAGGGAGG GGTGCGGAAG
  GGAGCAAGAA AAACCCCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51500075	NES13951166	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36466824					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51500075	NES13951166	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:72834585 () rs orientation: forward

Symbol	Name	Function Class
Gm20083	predicted gene, 20083	within coordinates
Gm28746	predicted gene 28746	177 bp downstream
Rr648885	regulatory region 648885	883 bp distal
Rr648886	regulatory region 648886	673 bp distal
Rr648887	regulatory region 648887	within coordinates
Rr648888	regulatory region 648888	546 bp proximal
Rr648889	regulatory region 648889	779 bp proximal
Rr648890	regulatory region 648890	1673 bp proximal
Tssr67187	transcription start site region 67187	929 bp upstream
Tssr67188	transcription start site region 67188	961 bp upstream