rs36466964 SNP Detail

Summary

• ID
  rs36466964
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:25112143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGTTTCT GTATGGAAAT
  TTTCATAATT ATAATGATTT CTTAAAGGAA AAATTGGCTA GGGATAGGGT TATATGTCAT
  AGTCTTTTAT CTCACTCATG CAGCATATAA AGCTATGCTA CATTTAGTAA GTTCTGAAAC
  ACTGATGCAC TAACATACTT GCATATACAG ATGCTTACAA ATGCATAGTG TTCCTGTGTA
  Y
  TGAAGTGATG GATGGTGATA AGATGAACTC CTCCACTACA GTTGGCTAAA TTAGAAATAT
  CAGTTCTTTA TACACAAGCC CAAATGATCA TACTTTCTAC TATAGAAAAT GAAAACCGAA
  TTTGACTGAG ATGTTTCAAG AGTTTCTTGT GATACCACTA TCTTCTTATA TTTCATGAGG
  CATTAGCTTG CTTCTCAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss51566229	NES14861515	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs36466964					SNP	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51566229	NES14861515	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:25112143 () rs orientation: forward

Symbol	Name	Function Class
Rr379084	regulatory region 379084	within coordinates