rs36467279 SNP Detail

Summary

• ID
  rs36467279
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:42266344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACCTCTAA GAAGTGCTGT
  GGCATTTGGT GCATGGGAAA CCTTTTGTTT GGACTGAGCT ACTGTGACTA TTCTAATGAC
  AGTGTCCCAG AGCCAACCCC AAATTTTCCC CCTTTCTCTT CTCTGCATCT TCCTGGAACA
  GCAGAGATGG GTACATCTGG TTTGCCTTCC TCTGTCTGGT TTCTACCTGT TCTCCTGCCA
  Y
  TCAGGAGCAG TCGGGAGCTG GGGTGTGTTT CTCCTTCCAC AGAGGGAAGG AAGTCAGCCC
  TTAGCTTGGA GGGGCATCCA GCCACTCGGA GGGTAGGAGT TTTTGTTGCT GCTCTGGGAC
  TGGCCATGCG AGAGGAGCTA CCTTTATGAT AATGAGAGGC CTCAGTTGGA TTTTCTTCTT
  CCTCACAAAC TGGTGTGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss50818835	NES13546249	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C		T	C		T
ss325811981	CHEV_19_42352395	CHEVERUD	SCREENING_POP	f	SNP										T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs36467279					SNP	T	T	T	T	T	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50818835	NES13546249	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:42266344 () rs orientation: forward

Symbol	Name	Function Class
Gm34347	predicted gene, 34347	1745 bp upstream